optimizing the gate operator and the output quantum state, respectively. For both GRAPE protocols, the key computation of gradients utilizes mixed information of the input Z-control pulse and the experimental measurement. With an imperfect initial pulse in a flattop waveform, our experimental implementation shows that the CZ gate is quickly improved and the gate fidelities subject to the two optimized pulses are around 99%. Our experimental study confirms the applicability of the data-driven GRAPE protocols in the problem of the gate optimization.