a detailed derivation of the MRT signal in the RF-SQUID flux qubit allowing for effects of flux and charge fluctuations on the interwell and intrawell transitions in the system. Taking into consideration transitions between the ground state in the initial well and excited states in the target well enable us to characterize both flux and charge noise source affecting the operation of the flux qubit. The MRT peak is formed by the dominant noise source affecting specific transition, with flux noise determining the lineshape of the ground to ground tunneling, whereas charge noise reveals itself as additional broadening of the ground to excited peak.